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Suggested reading


E-EO
Evolution: Education and Outreach


Understanding Evolution


Understanding Science


National Center for Science Education

ensi

Evolution and the Nature of Science Institutes

Resources: Software

This is a collection of software relevant for evolutionary research and education.  The programs are grouped into a number of overlapping categories for easier browsing:

You can switch between title, short, and full record view as you scroll through the collection by using the tabs at the top right.

Software

Avida

Content Tags:

A software platform for experiments with self-replicating and evolving computer programs.

Software
Software

Brownie

Content Tags:

A program for analyzing rates of continuous character evolution.

Software
Software

CAIC (Comparative Analysis by Independent Contrasts)


A freeware analysis package for Macintosh to compute phylogenetically independent contrasts.

Software
Software

COMPARE (Online)


An online program to run analyses of interspecific data in an evolutionary context.

Software
Software

Darwin at Home

Content Tags:

Watch as virtual lifeforms evolve different types of locomotion according to an algorithm based on mutation and natural selection.

Software
Software

EvoBeaker


A program containing interactive labs that help to explain evolutionary processes.

Software Teaching
Software

Evolution in Action (NOVA)


An interactive feature shows how random mutations can lead to species-wide change.

Software
Software

Evolution Lab (Biology in Motion)


An interactive demonstration of evolution from Biology in Motion.

Software Teaching Weblinks
Software

Evolution of Cooperation


An online simulation of the evolution of behavioral strategies under game theory.

Software
Software

Gene Pool

Content Tags:

A computer simulation where hundreds of virtual organisms evolve swimming skills.

Software
Software

Geneious


An integrated, cross-platform bioinformatics software suite.

Software
Software

How natural selection really works, the game (online)


A simulation of “How natural selection really works” based on the video of the same name.

Software
Software

Joe Felsenstein’s collection of phylogeny programs


A comprehensive collection of phylogeny programs.

Software Weblinks
Software

MacClade

Content Tags:

A computer program for phylogenetic analysis, including studies of character evolution.

Software
Software

MacroCAIC


A program for performing phylogenetically independent analyses to evaluate correlates of species richness.

Software
Software

MEGA (Molecular Evolutionary Genetic Analysis)

Content Tags:

An integrated tool for sequence alignment, inferring phylogenetic trees, and testing evolutionary hypotheses.

Software
Software

Mesquite and PDAP:PDTREE


Free software for phyologenetic analyses, including independent contrast analysis.

Software
Software

ModelTest

Content Tags:

A program for the selection of the model of nucleotide substitution that best fits the data.

Software
Software

MrBayes

Content Tags:

A program for the Bayesian estimation of phylogeny.

Software
Software

PAML: Phylogenetic Analysis by Maximum Likelihood

Content Tags:

A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.

Software
Software

PHYLIP


A free package of programs for inferring phylogenies.

Software
Software

PhyML (online)


A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

Software
Software

Population genetics simulations (online)


A series of population genetic simulations provided by Kent Holsinger of the University of Connecticut.

Software Teaching Weblinks
Software

R

Content Tags:

An open access statistical program with modules of interest in evolutionary biology.

Software
Software

Red Lynx: A Population Genetics Simulator (Online)


A simple online simulation of allele frequency changes under differing population genetics conditions.

Software Weblinks

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